SNP Profiles of PA 70 [PER] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AC	AC	AG	AC	AA	GG	GG	CC	AA	GG	GG	AA	AG	AC
1._GC-04-53-3-17	AA	CC	AG	AC	AA	GG	AG	CC	AA	GG	GG	AA	AG	AC
2._MITC-000025	AA	CC	AG	AC	AA	GG	AG	CC	AA	GG	GG	AA	AG	AC
3._MITC-000026	AA	CC	AG	AC	AA	GG	AG	CC	AA	GG	GG	AA	AG	AC
4._RUQ_33	AA	CC	AG	AC	AA	GG	AG	CC	AA	GG	GG	AA	AG	AC
5._RUQ_33	_	_	_	_	_	_	AG	_	_	_	_	_	_	_
6._PA70[PER]	_	_	_	_	_	CC	_	_	_	_	GG	_	_	_
7._GC-04-053-3-17	AA	CC	AG	AC	TT	CC	AG	GG	AA	CC	GG	TT	CT	GT
8._PA_70_[PER]	_	_	_	_	_	CC	AG	_	AA	_	_	_	_	_
9._RUQ_33	_	_	_	_	_	CC	_	GG	_	_	GG	_	_	_
10._PA_70_[PER]	_	_	_	_	_	CC	AG	_	AA	_	_	_	_	_
11._RUQ_33	_	_	_	_	_	CC	AG	_	AA	_	_	_	_	_
12._PA_70_[PER]	_	_	_	_	_	TT	AA	_	AA	_	_	_	_	_
13._GC-04-053-3-17	CC	AC	GG	AA	CT	TT	AA	GT	AA	CC	AA	TT	TT	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	AG	AG	CC	GG	AA	GG	AA	AG	CG	AG	CC	AG
1._GC-04-53-3-17	AA	AA	GG	AG	AC	GG	AA	GG	AA	AG	CC	AG	CC	GG
2._MITC-000025	AA	AA	GG	AG	AC	GG	AA	GG	AA	AG	CC	AG	CC	GG
3._MITC-000026	AA	AA	GG	AG	AC	GG	AA	GG	AA	AG	CC	AG	CC	GG
4._RUQ_33	AA	AA	GG	AG	AC	GG	AA	GG	AA	AG	CC	AG	CC	GG
5._RUQ_33	_	TT	_	_	_	_	_	_	AA	_	GG	_	_	_
6._PA70[PER]	_	_	_	_	_	_	_	CC	AA	_	CC	_	_	CC
7._GC-04-053-3-17	TT	TT	CC	TT	AC	GG	TT	CC	AA	CT	GG	AG	GG	CC
8._PA_70_[PER]	_	TT	CC	_	AC	_	TT	_	AA	CT	GG	AG	GG	CC
9._RUQ_33	_	TT	_	CT	_	_	_	CC	AA	CT	GG	AG	GG	CC
10._PA_70_[PER]	_	TT	CC	_	AC	_	TT	_	AA	CT	GG	AG	GG	CC
11._RUQ_33	_	TT	CC	_	AC	_	TT	_	AA	CT	GG	AG	GG	CC
12._PA_70_[PER]	_	TT	CC	_	AA	_	TT	_	AA	CT	GG	AA	GT	CC
13._GC-04-053-3-17	CC	TT	CC	TT	AA	GG	TT	TT	AA	CT	GG	AA	GT	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AG	TT	GG	AC	GG	AG	GG	GG	GG	CC	TT	AT	GG	GG
1._GC-04-53-3-17	GG	AT	GG	AA	GG	AG	GG	GG	GG	CC	TT	AT	GG	GG
2._MITC-000025	GG	AT	GG	AA	GG	AG	GG	GG	GG	CC	TT	AT	GG	GG
3._MITC-000026	GG	AT	GG	AA	GG	AG	GG	GG	GG	CC	TT	AT	GG	GG
4._RUQ_33	GG	AT	GG	AA	GG	AG	GG	GG	GG	CC	TT	AT	GG	GG
5._RUQ_33	_	_	_	_	_	AG	_	_	_	_	_	_	GG	_
6._PA70[PER]	_	_	GG	AA	GG	AG	_	_	_	_	_	_	_	GG
7._GC-04-053-3-17	CC	AT	GG	AA	CC	AG	GG	CC	GG	GG	AA	AT	GG	GG
8._PA_70_[PER]	CC	_	_	AA	_	AG	_	CC	GG	_	_	AT	_	_
9._RUQ_33	_	_	GG	AA	CC	AG	_	CC	_	_	_	_	GG	GG
10._PA_70_[PER]	CC	_	_	AA	CC	AG	_	CC	GG	_	_	AT	_	_
11._RUQ_33	CC	_	_	AA	CC	AG	_	CC	GG	_	_	AT	_	_
12._PA_70_[PER]	TT	_	_	AA	CG	AG	_	CT	GG	_	_	AT	_	_
13._GC-04-053-3-17	TT	AA	AG	AA	CG	AG	GG	CT	GG	GG	AT	AT	AG	AA

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AA	AG	AA	GG	GG	AA	GG	GG	CC	AA	AA	AG	GG	CC
1._GC-04-53-3-17	AA	AA	AG	GG	GG	AA	GG	GG	CC	AA	AG	AG	CG	AC
2._MITC-000025	AA	AA	AG	GG	GG	AA	GG	GG	CC	AA	AG	AG	CG	AC
3._MITC-000026	AA	AA	AG	GG	GG	AA	GG	GG	CC	AA	AG	AG	CG	AC
4._RUQ_33	AA	AA	AG	GG	GG	AA	GG	_	CC	AA	AG	AG	CG	AC
5._RUQ_33	_	_	_	_	_	_	_	_	_	AA	_	_	CG	AC
6._PA70[PER]	AA	TT	_	_	_	_	CC	_	_	_	_	_	CG	AC
7._GC-04-053-3-17	AA	TT	AG	GG	GG	AA	CC	_	CC	AA	AG	AG	CG	AC
8._PA_70_[PER]	AA	_	_	_	GG	_	_	_	_	AA	_	_	CG	AC
9._RUQ_33	AA	_	_	_	_	_	CC	_	_	AA	_	_	CG	AC
10._PA_70_[PER]	AA	_	_	_	GG	_	_	_	_	AA	_	_	CG	AC
11._RUQ_33	AA	_	_	_	GG	_	_	_	_	AA	_	_	CG	AC
12._PA_70_[PER]	AT	_	_	_	GG	_	_	_	_	CC	_	_	CC	AC
13._GC-04-053-3-17	AT	CT	AG	GG	GG	AA	CG	_	CC	CC	GG	AA	CC	AC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GG	GG	AA	AG	AA	CC	AG	AA	AC	CC	AA	AA	CC	GG
1._GC-04-53-3-17	GG	AG	AA	AG	AA	CC	GG	AA	AA	CC	AA	AA	GG	GG
2._MITC-000025	GG	AG	AA	AG	AA	CC	GG	AA	AA	CC	AA	AA	GG	GG
3._MITC-000026	GG	AG	AA	AG	AA	CC	GG	AA	AA	CC	AA	AA	GG	GG
4._RUQ_33	GG	AG	AA	AG	AA	CC	GG	AA	AA	CC	AA	AA	GG	GG
5._RUQ_33	_	CT	_	_	_	GG	GG	_	_	_	_	AA	TT	_
6._PA70[PER]	_	CT	_	_	_	_	_	_	TT	_	_	_	_	GG
7._GC-04-053-3-17	CC	CT	TT	AA	AA	GG	GG	TT	TT	GG	TT	AA	CC	_
8._PA_70_[PER]	_	_	TT	_	_	GG	_	_	_	_	_	_	_	_
9._RUQ_33	_	CT	TT	_	_	GG	GG	TT	_	_	TT	AA	_	_
10._PA_70_[PER]	_	_	TT	_	_	GG	_	_	_	_	_	_	_	_
11._RUQ_33	_	_	TT	_	_	GG	_	_	_	_	_	_	_	_
12._PA_70_[PER]	_	_	TT	_	_	GT	_	_	_	_	_	_	_	_
13._GC-04-053-3-17	CT	CT	TT	AG	AG	GT	GG	CT	GT	GT	GT	AC	GG	AA

	71	72	73	74	75	76	77	78	79	80	81
_Input profile	CC	GG	GG	GG	CC	GG	CC	GG	AA	GG	AG	X_X	X_X	X_X
1._GC-04-53-3-17	CC	GG	GG	GG	CC	AG	CG	GG	AA	GG	AG	X_X	X_X	X_X
2._MITC-000025	CC	GG	GG	GG	CC	AG	CG	GG	AA	GG	AG	X_X	X_X	X_X
3._MITC-000026	CC	GG	GG	GG	CC	AG	CG	GG	AA	GG	AG	X_X	X_X	X_X
4._RUQ_33	CC	GG	GG	GG	CC	AG	CG	GG	AA	GG	AG	X_X	X_X	X_X
5._RUQ_33	GG	_	_	GG	_	_	_	_	_	_	AG	X_X	X_X	X_X
6._PA70[PER]	CC	CC	_	_	_	_	_	_	_	CC	_	X_X	X_X	X_X
7._GC-04-053-3-17	GG	CC	CC	GG	CC	CT	CG	CC	AA	CC	AG	X_X	X_X	X_X
8._PA_70_[PER]	GG	CC	_	_	_	CT	CG	_	AA	CC	AG	X_X	X_X	X_X
9._RUQ_33	GG	CC	_	GG	CC	_	_	_	_	_	AG	X_X	X_X	X_X
10._PA_70_[PER]	GG	CC	_	_	_	CT	CG	_	AA	CC	AG	X_X	X_X	X_X
11._RUQ_33	GG	CC	_	_	_	CT	CG	_	AA	CC	AG	X_X	X_X	X_X
12._PA_70_[PER]	CG	CC	_	_	_	TT	GG	_	AA	TT	AG	X_X	X_X	X_X
13._GC-04-053-3-17	CG	CC	CC	AA	AA	TT	GG	TT	AA	TT	AG	X_X	X_X	X_X

Input profile: PA_70_[PER] PA_70_[PER]_Fld#_185_Plt#_1

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USDA-TARS, United States of America

Location: Field: 185, Tree: 1

1._PA_70_[PER] GC-04-53-3-17

86.4 %
81 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 4, Block: 3, Rep: 17, Tree: 6 > FP2 (verde)

Notes: MCCS_Structure_refs_above_0.9membership

2._PA_70_[PER] MITC-000025

86.4 %
81 shared markers

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USDA-SHRS, United States of America

3._PA_70_[PER] MITC-000026

86.4 %
81 shared markers

View View all Clone Any

USDA-SHRS, United States of America

4._PA_70_[PER] RUQ_33

86.3 %
80 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

5._PA_70_[PER] RUQ_33

55.9 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

6._PA_70_[PER] PA70[PER]

50 %
22 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

7._PA_70_[PER] GC-04-053-3-17

44.3 %
79 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP2 (verde)

8._PA_70_[PER]

43.9 %
33 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D634

Dapeng Zhang, 2016

9._PA_70_[PER] RUQ_33

43.1 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

10._PA_70_[PER]

42.6 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4317 6 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

11._PA_70_[PER] RUQ_33

42.6 %
34 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

12._PA_70_[PER]

33.8 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4317 2 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

13._PA_70_[PER] GC-04-053-3-17

30.6 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1 (roxo)

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1350	20	TcSNP1383
21	TcSNP1414	22	TcSNP1439	23	TcSNP144	24	TcSNP1442	25	TcSNP1458
26	TcSNP1484	27	TcSNP150	28	TcSNP151	29	TcSNP1520	30	TcSNP154
31	TcSNP174	32	TcSNP193	33	TcSNP226	34	TcSNP230	35	TcSNP240
36	TcSNP242	37	TcSNP25	38	TcSNP28	39	TcSNP316	40	TcSNP32
41	TcSNP329	42	TcSNP364	43	TcSNP372	44	TcSNP413	45	TcSNP418
46	TcSNP42	47	TcSNP429	48	TcSNP430	49	TcSNP448	50	TcSNP497
51	TcSNP521	52	TcSNP529	53	TcSNP547	54	TcSNP561	55	TcSNP577
56	TcSNP591	57	TcSNP60	58	TcSNP602	59	TcSNP619	60	TcSNP653
61	TcSNP689	62	TcSNP723	63	TcSNP731	64	TcSNP75	65	TcSNP751
66	TcSNP776	67	TcSNP799	68	TcSNP823	69	TcSNP836	70	TcSNP860
71	TcSNP872	72	TcSNP891	73	TcSNP894	74	TcSNP899	75	TcSNP90
76	TcSNP917	77	TcSNP929	78	TcSNP944	79	TcSNP953	80	TcSNP994
81	TcSNP998